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1

Optimal Mass Transport: Signal processing and machine-learning applications

Kolouri, Soheil, Park, Se Rim, Thorpe, Matthew, Slepcev, Dejan, Rohde, Gustavo K.

Journal:

IEEE Signal Processing Magazine

Year:

2017

Language:

english

File:

PDF, 4.63 MB

english, 2017

2

Neural Networks, Hypersurfaces, and the Generalized Radon Transform [Lecture Notes]

Kolouri, Soheil, Yin, Xuwang, Rohde, Gustavo K.

Journal:

IEEE Signal Processing Magazine

Year:

2020

File:

PDF, 3.97 MB

2020

3

New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter

Yaniv Assaf, Raisa Z. Freidlin, Gustavo K. Rohde, Peter J. Basser

Journal:

Magnetic Resonance in Medicine

Year:

2004

Language:

english

File:

PDF, 1.38 MB

english, 2004

4

Toward the virtual cell: Automated approaches to building models of subcellular organization “learned” from microscopy images

Taráz E. Buck, Jieyue Li, Gustavo K. Rohde, Robert F. Murphy

Journal:

Year:

2012

Language:

english

File:

PDF, 501 KB

english, 2012

5

Penalized Fisher discriminant analysis and its application to image-based morphometry

Wei Wang, Yilin Mo, John A. Ozolek, Gustavo K. Rohde

Journal:

Pattern Recognition Letters

Year:

2011

Language:

english

File:

PDF, 896 KB

english, 2011

6

A Linear Optimal Transportation Framework for Quantifying and Visualizing Variations in Sets of Images

Wei Wang, Dejan Slepčev, Saurav Basu, John A. Ozolek, Gustavo K. Rohde

Journal:

International Journal of Computer Vision

Year:

2013

Language:

english

File:

PDF, 860 KB

english, 2013

7

Robust efficient estimation of heart rate pulse from video

Xu, Shuchang, Sun, Lingyun, Rohde, Gustavo Kunde

Journal:

Biomedical Optics Express

Year:

2014

Language:

english

File:

PDF, 3.35 MB

english, 2014

8

The Radon Cumulative Distribution Transform and Its Application to Image Classification

Kolouri, Soheil, Park, Se Rim, Rohde, Gustavo K.

Journal:

IEEE Transactions on Image Processing

Year:

2016

Language:

english

File:

PDF, 4.90 MB

english, 2016

9

[IEEE 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) - Boston, MA, USA (2015.6.7-2015.6.12)] 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) - Transport-based single frame super resolution of very low resolution face images

Kolouri, Soheil, Rohde, Gustavo K.

Year:

2015

Language:

english

File:

PDF, 2.87 MB

english, 2015

10

Label-efficient Breast Cancer Histopathological Image Classification

Qi, Qi, Li, Yanlong, Wang, Jitian, Zheng, Han, Huang, Yue, Ding, Xinghao, Rohde, Gustavo

Journal:

IEEE Journal of Biomedical and Health Informatics

Year:

2018

Language:

english

File:

PDF, 12.65 MB

english, 2018

11

Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning

Kundu, Shinjini, Ashinsky, Beth G., Bouhrara, Mustapha, Dam, Erik B., Demehri, Shadpour, Shifat-E-Rabbi, Mohammad, Spencer, Richard G., Urish, Kenneth L., Rohde, Gustavo K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.07 MB

2020

12

Deformation-based nuclear morphometry: Capturing nuclear shape variation in HeLa cells

Gustavo K. Rohde, Alexandre J. S. Ribeiro, Kris N. Dahl, Robert F. Murphy

Journal:

Cytometry Part A

Year:

2008

Language:

english

File:

PDF, 361 KB

english, 2008

13

A generative model of microtubule distributions, and indirect estimation of its parameters from fluorescence microscopy images

Aabid Shariff, Robert F. Murphy, Gustavo K. Rohde

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 546 KB

english, 2010

14

Detection and classification of thyroid follicular lesions based on nuclear structure from histopathology images

Wei Wang, John A. Ozolek, Gustavo K. Rohde

Journal:

Cytometry Part A

Year:

2010

Language:

english

File:

PDF, 546 KB

english, 2010

15

Stochastic analysis of recurrence plots with applications to the detection of deterministic signals

Gustavo K. Rohde, Jonathan M. Nichols, Bryan M. Dissinger, Frank Bucholtz

Journal:

Physica D: Nonlinear Phenomena

Year:

2008

Language:

english

File:

PDF, 1.72 MB

english, 2008

16

PavB is a surface-exposed adhesin of Streptococcus pneumoniae contributing to nasopharyngeal colonization and airways infections

Inga Jensch, Gustavo Gámez, Michael Rothe, Sandra Ebert, Marcus Fulde, Daniela Somplatzki, Simone Bergmann, Lothar Petruschka, Manfred Rohde, Roland Nau, Sven Hammerschmidt

Journal:

Molecular Microbiology

Year:

2010

Language:

english

File:

PDF, 2.02 MB

english, 2010

17

Regional distribution of measurement error in diffusion tensor imaging

Stefano Marenco, Robert Rawlings, Gustavo K. Rohde, Alan S. Barnett, Robyn A. Honea, Carlo Pierpaoli, Daniel R. Weinberger

Journal:

Psychiatry Research: Neuroimaging

Year:

2006

Language:

english

File:

PDF, 430 KB

english, 2006

18

High-Throughput Arrays for Rapid Characterization of Solution-Processable Transparent Conducting Electrodes

Stephen Kustra, Haosheng Wu, Saurav Basu, Gustavo K. Rohde, Christopher J. Bettinger

Journal:

Year:

2012

Language:

english

File:

PDF, 3.62 MB

english, 2012

19

Estimating intensity variance due to noise in registered images: Applications to diffusion tensor MRI

Gustavo K. Rohde, Alan S. Barnett, Peter J. Basser, Carlo Pierpaoli

Journal:

Year:

2005

Language:

english

File:

PDF, 350 KB

english, 2005

20

Cancer diagnosis by nuclear morphometry using spatial information

Huang, Hu, Tosun, Akif Burak, Guo, Jia, Chen, Cheng, Wang, Wei, Ozolek, John A., Rohde, Gustavo K.

Journal:

Pattern Recognition Letters

Year:

2014

Language:

english

File:

PDF, 698 KB

english, 2014

21

[IEEE 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Osaka (2013.7.3-2013.7.7)] 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - New methods for quantifying and visualizing information from images of cells: An overview

Rohde, Gustavo Kunde

Year:

2013

Language:

english

File:

PDF, 710 KB

english, 2013

22

A computer-based automated algorithm for assessing acinar cell loss after experimental pancreatitis

Eisses, John, Davis, Amy, Tosun, Akif, Ozolek, John, Rohde, Gustavo, Husain, Sohail

Journal:

Year:

2014

Language:

english

File:

PDF, 72 KB

english, 2014

23

Optimized Nonlinear Discriminant Analysis (ONDA) for Supervised Pixel Classification

Guo, Jia, Huang, Hu, Chen, Cheng, Rohde, Gustavo K.

Journal:

IEEE Signal Processing Letters

Year:

2013

Language:

english

File:

PDF, 573 KB

english, 2013

24

[IEEE 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI 2014) - Beijing, China (2014.4.29-2014.5.2)] 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) - Learning and visualizing statistical relationships between protein distributions from microscopy images

Kolouri, Soheil, Basu, Saurav, Rohde, Gustavo K.

Year:

2014

Language:

english

File:

PDF, 901 KB

english, 2014

25

[IEEE 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011) - Chicago, IL, USA (2011.03.30-2011.04.2)] 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Characterizing morphology differences from image data using a modified fisher criterion

Wang, Wei, Mo, Yilin, Ozolek, John A., Rohde, Gustavo K.

Year:

2011

Language:

english

File:

PDF, 303 KB

english, 2011

26

[IEEE 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Rotterdam, Netherlands (2010.04.14-2010.04.17)] 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - A graph-based method for detecting characteristic phenotypes from biomedical images

Wang, Wei, Chen, Cheng, Peng, Tao, Slepcev, Dejan, Ozolek, John A., Rohde, Gustavo K.

Year:

2010

Language:

english

File:

PDF, 551 KB

english, 2010

27

[IEEE 2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008) - Paris, France (2008.05.14-2008.05.17)] 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Axonal bouton modeling, detection and distribution analysis for the study of neural circuit organization and plasticity

Hallock, Christina A., Ozgunes, Inci, Bhagavatula, Ramamurthy, Rohde, Gustavo K., Crowley, Justin C., Onorato, Christina E., Mavalankar, Abhay, Chebira, Amina, Chuen Hwa Tan,, Puschel, Markus, Kovace

Year:

2008

Language:

english

File:

PDF, 210 KB

english, 2008

28

Texton analysis for mass classification in mammograms

Li, Yanfeng, Chen, Houjin, Rohde, Gustavo Kunde, Yao, Chang, Cheng, Lin

Journal:

Pattern Recognition Letters

Year:

2015

Language:

english

File:

PDF, 1.62 MB

english, 2015

29

A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching

Chen, Cheng, Wang, Wei, Ozolek, John A., Rohde, Gustavo K.

Journal:

Cytometry Part A

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

30

[IEEE 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011) - Chicago, IL, USA (2011.03.30-2011.04.2)] 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Automated estimation of microtubule model parameters from 3-D live cell microscopy images

Shariff, Aabid, Murphy, Robert F., Rohde, Gustavo K.

Year:

2011

Language:

english

File:

PDF, 721 KB

english, 2011

31

[IEEE 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011) - Chicago, IL, USA (2011.03.30-2011.04.2)] 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - A pixel classification system for segmenting biomedical images using intensity neighborhoods and dimension reduction

Chen, Cheng, Ozolek, John A., Wang, Wei, Rohde, Gustavo K.

Year:

2011

Language:

english

File:

PDF, 275 KB

english, 2011

32

[IEEE 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Arlington, VA, USA (2007.04.12-2007.04.15)] 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - FAST GLOBAL IMAGE REGISTRATION USING RANDOM PROJECTIONS

Healy, Dennis, Rohde, Gustavo

Year:

2007

Language:

english

File:

PDF, 132 KB

english, 2007

33

[IEEE 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI) - Boston, MA, USA (2009.06.28-2009.07.1)] 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Instance-based generative biological shape modeling

Peng, Tao, Wang, Wei, Rohde, Gustavo K., Murphy, Robert F.

Year:

2009

Language:

english

File:

PDF, 232 KB

english, 2009

34

γH2AX responses in human buccal cells exposed to ionizing radiation

Siddiqui, Mohammad Sabbir, François, Maxime, Fenech, Michael F., Leifert, Wayne R., Rohde, Gustavo K.

Journal:

Cytometry Part A

Year:

2015

Language:

english

File:

PDF, 606 KB

english, 2015

35

[IEEE 2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008) - Paris, France (2008.05.14-2008.05.17)] 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Deformation-based nonlinear dimension reduction: Applications to nuclear morphometry

Rohde, Gustavo K., Wei Wang,, Tao Peng,, Murphy, Robert F.

Year:

2008

Language:

english

File:

PDF, 127 KB

english, 2008

36

[IEEE 2012 IEEE 9th International Symposium on Biomedical Imaging (ISBI 2012) - Barcelona, Spain (2012.05.2-2012.05.5)] 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) - A template matching approach for segmenting microscopy images

Chen, Cheng, Wang, Wei, Ozolek, John A., Lages, Nuno, Altschuler, Steven J., Wu, Lani F., Rohde, Gustavo K.

Year:

2012

Language:

english

File:

PDF, 381 KB

english, 2012

37

[IEEE 2014 40th Annual Northeast Bioengineering Conference (NEBEC) - Boston, MA, USA (2014.4.25-2014.4.27)] 2014 40th Annual Northeast Bioengineering Conference (NEBEC) - Temporal information inference from static high-content fluorescent microscopy

Kolouri, Soheil, Rohde, Gustavo K.

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

38

Simple computational technique to quantify nuclear shape asymmetry

Nikonenko, Alexander G., Bozhok, Yuriy M., Rohde, Gustavo K.

Journal:

Cytometry Part A

Year:

2015

Language:

english

File:

PDF, 348 KB

english, 2015

39

Computational analysis of cell images

Rohde, Gustavo K., Rohde, Gustavo K.

Journal:

Cytometry Part A

Year:

2015

Language:

english

File:

PDF, 68 KB

english, 2015

40

SPIE Proceedings [SPIE Medical Imaging - San Diego, CA (Saturday 12 February 2005)] Medical Imaging 2005: Image Processing - Measuring image similarity in the presence of noise

Rohde, Gustavo K., Berenstein, Carlos A., Healy, Jr., Dennis M., Fitzpatrick, J. Michael, Reinhardt, Joseph M.

Year:

2005

Language:

english

File:

PDF, 434 KB

english, 2005

41

Detecting and visualizing cell phenotype differences from microscopy images using transport-based morphometry

Basu, Saurav, Kolouri, Soheil, Rohde, Gustavo K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

42

Computational image analysis of nuclear morphology associated with various nuclear-specific aging disorders

Choi, Siwon, Wang, Wei, Ribeiro, Alexandrew J.S., Kalinowski, Agnieszka, Gregg, Siobhan Q., Opresko, Patricia L., Niedernhofer, Laura J., Rohde, Gustavo K., Dahl, Kris Noel

Journal:

Nucleus (Landes Bioscience)

Year:

2011

Language:

english

File:

PDF, 2.17 MB

english, 2011

43

A General System for Automatic Biomedical Image Segmentation Using Intensity Neighborhoods

Chen, Cheng, Ozolek, John A., Wang, Wei, Rohde, Gustavo K.

Journal:

International Journal of Biomedical Imaging

Year:

2011

Language:

english

File:

PDF, 5.52 MB

english, 2011

44

A continuous linear optimal transport approach for pattern analysis in image datasets

Kolouri, Soheil, Tosun, Akif B., Ozolek, John A., Rohde, Gustavo K.

Journal:

Pattern Recognition

Year:

2016

Language:

english

File:

PDF, 1.48 MB

english, 2016

45

Maximum empirical likelihood estimation of time delay in independently and identically distributed noise

Nichols, Jonathan M., Bucholtz, Frank, Rohde, Gustavo K.

Journal:

IET Signal Processing

Year:

2014

Language:

english

File:

PDF, 579 KB

english, 2014

46

Extraction of Individual Filaments from 2D Confocal Microscopy Images of Flat Cells

Basu, Saurav, Liu, Chi, Rohde, Gustavo Kunde

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

47

SPIE Proceedings [SPIE SPIE Medical Imaging - San Diego, California, USA (Saturday 15 February 2014)] Medical Imaging 2014: Image Processing - Quantifying and visualizing variations in sets of images using continuous linear optimal transport

Ourselin, Sebastien, Styner, Martin A., Kolouri, Soheil, Rohde, Gustavo K.

Year:

2014

Language:

english

File:

PDF, 398 KB

english, 2014

48

SPIE Proceedings [SPIE Medical Imaging 2002 - San Diego, CA (Saturday 23 February 2002)] Medical Imaging 2002: Image Processing - Adaptive-bases algorithm for nonrigid image registration

Rohde, Gustavo K., Aldroubi, Akram, Dawant, Benoit M., Sonka, Milan, Fitzpatrick, J. Michael

Year:

2002

Language:

english

File:

PDF, 298 KB

english, 2002

49

SPIE Proceedings [SPIE SPIE Medical Imaging - San Diego, California, USA (Saturday 15 February 2014)] Medical Imaging 2014: Digital Pathology - Novel computer-aided diagnosis of mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens

Gurcan, Metin N., Madabhushi, Anant, Tosun, Akif Burak, Yergiyev, Oleksandr, Kolouri, Soheil, Silverman, Jan F., Rohde, Gustavo K.

Year:

2014

Language:

english

File:

PDF, 515 KB

english, 2014

50

SPIE Proceedings [SPIE International Symposium on Optical Science and Technology - San Diego, CA (Sunday 30 July 2000)] Wavelet Applications in Signal and Image Processing VIII - Multiscale nonrigid data registration using adaptive basis functions

Dinsenbacher, Thomas, Rohde, Gustavo K., Hardin, Douglas P., Aldroubi, Akram, Dawant, Benoit M., Aldroubi, Akram, Laine, Andrew F., Unser, Michael A.

Year:

2000

Language:

english

File:

PDF, 508 KB

english, 2000